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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_27.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26684.9 Da PI: 9.1858 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ evm.model.supercontig_27.16 31 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 81 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.90E-18 | 31 | 88 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-22 | 31 | 89 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-14 | 31 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-39 | 31 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 31 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAPRANTAAM KPISNGNVAP AAAGADCKEV HFRGVRKRPW GRYAAEIRDP GKKSRVWLGT 60 FDTAEEAARA YDAAAREFRG AKAKTNFPLP PENLTMASTK RAKNENGSIN NNNQSPSQSS 120 TVESSSCCEP EPALTMDSSP LDLNLGRGFG SADKFPFQPP ATPAVGFFPG GVVSANQMMY 180 LNAIMRAGEA MKGQQYQRIR FNNHHHGGGV QSDSDSSSVV DVKPAPPPPT TRGPLFDFDL 240 NQLPPPEIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 27 | 89 | 1 | 64 | ATERF1 |
3gcc_A | 2e-21 | 27 | 89 | 1 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_27.16 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902387.1 | 0.0 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0H3YCD0 | 2e-62 | A0A0H3YCD0_9ROSA; Transcription factor ERF11 | ||||
STRING | evm.model.supercontig_27.16 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-27 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_27.16 |