 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_2611.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 481aa MW: 55761.3 Da PI: 5.6383 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_2611.1 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 91.7 | 7.7e-29 | 40 | 124 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
rW+++e+laL+++r++m+ ++r++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++ke +++r +s+t+++
evm.model.supercontig_2611.1 40 RWPREETLALLKIRSDMDAAFRDSGHKAPLWEEVSRKLSELGYNRSAKKCKEKFENIFKYHRRTKECRSGR--SNSKTYRF 118
8********************************************************************97..56678*** PP
trihelix 82 fdqlea 87
f+qlea
evm.model.supercontig_2611.1 119 FEQLEA 124
****85 PP
|
| 2 | trihelix | 102.9 | 2.4e-32 | 316 | 401 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
rW+k+e+ aLi++r ++++++ +++ k+plWee+s++m++ g+ r++k+Ckekwen+nk++kk+ke++kkr se+s+tcpy
evm.model.supercontig_2611.1 316 RWPKEEIEALIKLRANLDTQYDESAPKGPLWEEISAAMKKLGYDRNAKRCKEKWENMNKYFKKVKESNKKR-SEDSKTCPY 395
8*********************************************************************8.89999**** PP
trihelix 82 fdqlea 87
f+ql+a
evm.model.supercontig_2611.1 396 FQQLDA 401
****85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MENSTSVTDN RDTEEAADRL GQEEGRVKVE ESDRYFPGNR WPREETLALL KIRSDMDAAF 60
RDSGHKAPLW EEVSRKLSEL GYNRSAKKCK EKFENIFKYH RRTKECRSGR SNSKTYRFFE 120
QLEALDNHNS LYMPLPLDSV QTSMPPPINT VPTNISHVNF AHDPIPCSIK NPTTNYADTS 180
PSTSFSSKES DGMHKKKRKL AEFFEGLMRK VMEKQENLQK KFVEAIEKFE QDRIAREEAW 240
KMQELARIKR ERELLVQERS VVAAKDAAVL AFLQKFSEQT NSVQMPQIPV AVEKVVERQE 300
DGDGGENFIH QMSSSRWPKE EIEALIKLRA NLDTQYDESA PKGPLWEEIS AAMKKLGYDR 360
NAKRCKEKWE NMNKYFKKVK ESNKKRSEDS KTCPYFQQLD ALYKEKTRKP DSSVSSGYNM 420
KPEELLMHMM DSQEEQRPDL HVEDGESESA DQSEEHRDNE DEGNNYQIGA DNSFSMEIIE 480
*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
