PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_26.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 412aa    MW: 45341.7 Da    PI: 9.8068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_26.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033176198223
                                  EETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   C+ Cg++F+  ++L+ H+ + H
  evm.model.supercontig_26.33 176 ACSQCGEVFPKIESLELHQAVrH 198
                                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808175203IPR007087Zinc finger, C2H2
SuperFamilySSF563995.28E-22200407No hitNo description
Gene3DG3DSA:3.90.228.101.7E-10201407IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAPLIHHQTE TEKQPPLTKH RRKKKKKKKQ QLQEEQKPKP KQPSSWDHFK NLFSCKQIQG  60
SNIHDPQYAY SKLGSSCNSI CSFRDVVRGN TRVVHRPDNS PDGTTPAHKT RLLAGQKPVT  120
SASSTRALSG STRSKAASTC PASSKAMQFR KLSGCYECHM IVDPTRYPTP RTTVCACSQC  180
GEVFPKIESL ELHQAVRHAV SELSPEDSGR NIVEIIFKSS WLKRDSTIYK IERILKVHNT  240
QRTIQRFEDC RDAVKTRALH STRKNPRCAA DGNELLRFYC TTVSCSLGAR GSSSLCGSVP  300
GCGVCTVIRN GFQGKSEFKG VRTTASSGRA HDCVKCSGER RGMIVCRVIA GRVKCMADDG  360
SAEEDSSSAG PGSYDSVAGY AGIFSNLEEL LVFNPRAILP CFVVIYKAFE S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026RRKKKKK
22028RRKKKKKKK
32228KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_26.33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902635.10.0uncharacterized protein LOC110818173
TrEMBLA0A1R3IXV10.0A0A1R3IXV1_COCAP; Putative nucleic acid binding protein
STRINGevm.model.supercontig_26.330.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-163C2H2-like zinc finger protein