PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.96
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YA
Protein Properties Length: 328aa    MW: 35748.9 Da    PI: 9.507
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.96genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32174230158
                    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                  d p+YVNaKQy++Il+RR++Rakle+++kl +k+rkpylheSRh hAl+R+Rg+gGrF
  evm.model.supercontig_25.96 174 DGPIYVNAKQYHAILRRRKHRAKLEAQNKL-IKARKPYLHESRHLHALKRARGTGGRF 230
                                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.11173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-26176230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-23176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-23207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQPLHKKESG LSSSQSASPY VVACPSWGHS TDSNVQSSSM TENLSLKMGA LPQHFHSTKQ  60
LNFQFQDQDS SSTQSTGQSY PEVASMGDSN PYGQNTGSTV SGYDEMHRKS AGGHSKLASS  120
MGSQDFVFPL SQQTRFPLHY AEPCFGGLLT PAYVPQVMGI VPARVPLPLD MKEDGPIYVN  180
AKQYHAILRR RKHRAKLEAQ NKLIKARKPY LHESRHLHAL KRARGTGGRF LNTKKLQDSK  240
STPADRVLDG SGSRQLHVDG NMSESEVHHP ENCRGGVYAA ACSDITSAST SDNLYPQQEF  300
RFSGYPSRGG GTIYSQSGGL HHLSVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19174234262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.96
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902987.10.0nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021902988.10.0nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021902989.10.0nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021902990.10.0nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021902991.10.0nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021902992.10.0nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A1R3H6V91e-136A0A1R3H6V9_9ROSI; CCAAT-binding transcription factor, subunit B
STRINGevm.model.supercontig_25.960.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-75nuclear factor Y, subunit A3