PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.81
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 306aa    MW: 33388.6 Da    PI: 9.1207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.81genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12556147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                 +++WT eE++ lv +v ++G+g W+ I +        + R+  ++k++w+++
  evm.model.supercontig_25.81  5 KQKWTVEEEKALVAGVDKHGPGKWRNILNDKEfgpllTLRSNVDLKDKWRNL 56
                                 79**************************999999***99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.557162IPR017930Myb domain
SuperFamilySSF466895.1E-15258IPR009057Homeodomain-like
SMARTSM007174.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-13456IPR009057Homeodomain-like
PfamPF002491.4E-9556IPR001005SANT/Myb domain
CDDcd116601.88E-19656No hitNo description
SMARTSM005261.0E-15120185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.39E-14121195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-12122187IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.834122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.7E-9124183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGNQKQKWTV EEEKALVAGV DKHGPGKWRN ILNDKEFGPL LTLRSNVDLK DKWRNLSVNP  60
GGSGAKDKSR TPKLKAVAAA AAAAAASTPN APNSTPSGLV NHNASADIAL DDPSNSPADG  120
NNAPRYNSII FEALSTIKDP NGCDISAIVN YIEQRQEVPQ NFRRSLSSRL RRLVAQGKLE  180
KVQNCYKIRE DTSLENRTAI LRQKDVRLRP PQNSPLATCG RAMEEASVTA AYRLAEAENK  240
SYLAAEAVKE AERISKMAED TDSMLQIVQE IYDQCARGEI VPLSILRLGA QSLPLWVSSN  300
EKEGR*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.81
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902869.10.0telomere repeat-binding factor 4-like
SwissprotF4I7L13e-85TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0B0MK001e-128A0A0B0MK00_GOSAR; Histone H1
TrEMBLA0A1U8PEM91e-128A0A1U8PEM9_GOSHI; telomere repeat-binding factor 4-like
STRINGevm.model.supercontig_25.810.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.17e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]