PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.46
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 564aa    MW: 62116.4 Da    PI: 8.6304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.46genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0593115123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++C+k F r  nL+ H r H
  evm.model.supercontig_25.46  93 FVCEICNKGFQRDQNLQLHRRGH 115
                                  89*******************88 PP
2zf-C2H211.90.00068169191123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  +kC +C+k +  +s+ k H +t+
  evm.model.supercontig_25.46 169 WKCDKCSKKYAVQSDWKAHSKTC 191
                                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-692115No hitNo description
PROSITE profilePS5015710.94993115IPR007087Zinc finger, C2H2
SMARTSM003550.01793115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355250134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-6164189No hitNo description
SMARTSM00355150169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MMKDLLFHHQ QQQQQQQLME ENMSNLTSAS GEASVNSSGN RTESGTNYPQ QYLGTPPQIQ  60
PPPKKKRNLP GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRTTKEVR KKVYVCPESS CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARAITT GAANTNPLLS  240
SHLQLPGSSS SHINLQVPQD LHAFSLKKEQ QNYSSLRPEM PPWLASCPTQ PQHQSLDHVS  300
SSSSSTFSTR LDHHHQDFTV QQKSIHDHHH TPNPNPSLGP TMLPPSYHPT PSPHMSATAL  360
LQKAAQMGAT MSSSCKTTGS SSPTPPALIR PHQQPHVSAD SGHSATTTTA GFGLNLSSRE  420
ELQVASGYVH HVLPDPFGTR PAGGLFQDMM CSLSSAATGF DQQGVNNSFD ESFGGILNAK  480
KYFSLDEVRK EDMCSTITRT NITNVSKNDH HDQQTGGIKG GEGLTRDFLG LKAFSHTDIL  540
SIAGLSNCMN TTTSQDQSSQ KPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35165226364Zinc finger protein JACKDAW
5b3h_F3e-35165226364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119131KLKQRTTKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.46
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902946.10.0protein indeterminate-domain 11
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2N9GBX10.0A0A2N9GBX1_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_25.460.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-109indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]