PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.124
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 515aa    MW: 58614.2 Da    PI: 6.8849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.124genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.88.6e-761325062374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   ++lL  cA a+s+g++ ++q+lL  l+el+s +gd+++Rlaa+ ++ALa++l++s  ++     p + + ++      +l 
  evm.model.supercontig_25.124 132 EQLLNPCAAAISAGNFVRVQHLLYVLHELQSLKGDANHRLAAHGLKALAQHLSSSPVSIG----PGTFACTEPRFFQRSLI 208
                                   689***************************************************433333....33333222334444444 PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..... 153
                                    f+evsP++ f + +aN+ Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ Rp+gpp  +RiT++ + +++     
  evm.model.supercontig_25.124 209 RFYEVSPWFSFPNTIANSSILQILAQEpdrtSSLHILDIGVSHGVQWPTLLEALSRRPGGPPsLVRITVITPTNESdqsia 289
                                   5*************************99887889************************9999678******9777788888 PP

                          GRAS 154 ...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                            +  +rL +fA+++++++++nv+  ++l++l+ + +++  +E+l+++ +++lh+l    +s+++er ++Lk++
  evm.model.supercontig_25.124 290 pfsVGPPGDNFVSRLLRFAKSMNIDLQINVIDNHQLQNLNAQIINTCCDENLIICAQFRLHQLN---HSSPDERAKFLKVL 367
                                   887677889999******************9888*****************************8...66666778****** PP

                          GRAS 232 kslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                                   +s +Pk v+++e+++++   n ++F+++f+++++y ++++ds+++ +    + r + Er++++ e+ +++ ++g++    +
  evm.model.supercontig_25.124 368 RSWEPKGVILTENNMECsctNCGDFATGFSRKVDYLWKFLDSTSSAF----KGRESEERRVMEGEAAKALINKGEM----N 440
                                   *************9665437889********************7765....6666666667777788999999998....8 PP

                          GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   e++ekW er++ea F +  ++e++ +  ++llrk++ ++++rv+++++++ l Wk++p+ ++S Wr
  evm.model.supercontig_25.124 441 ESKEKWCERMKEARFLAEVFGEDTIDGGRALLRKYDnNWEMRVDDRNECVGLWWKGQPVSFCSLWR 506
                                   999*********************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.451105485IPR005202Transcription factor GRAS
PfamPF035143.0E-73132506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MTFEEQNHAS NYALDWLEDS VSFLPSFFDD TYTSDDINNY QLWGQSDQEL DHNLISQLCC  60
FPRHQHHLQF YQYRQLNTPL ILLFLIIHHY PIHGRNERIR AVKNSVGNKK IIKKSTVSSS  120
NNSNGKEGRW AEQLLNPCAA AISAGNFVRV QHLLYVLHEL QSLKGDANHR LAAHGLKALA  180
QHLSSSPVSI GPGTFACTEP RFFQRSLIRF YEVSPWFSFP NTIANSSILQ ILAQEPDRTS  240
SLHILDIGVS HGVQWPTLLE ALSRRPGGPP SLVRITVITP TNESDQSIAP FSVGPPGDNF  300
VSRLLRFAKS MNIDLQINVI DNHQLQNLNA QIINTCCDEN LIICAQFRLH QLNHSSPDER  360
AKFLKVLRSW EPKGVILTEN NMECSCTNCG DFATGFSRKV DYLWKFLDST SSAFKGRESE  420
ERRVMEGEAA KALINKGEMN ESKEKWCERM KEARFLAEVF GEDTIDGGRA LLRKYDNNWE  480
MRVDDRNECV GLWWKGQPVS FCSLWRLDKK ADEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3512850684473Protein SHORT-ROOT
5b3h_B2e-3512850630419Protein SHORT-ROOT
5b3h_E2e-3512850630419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.124
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903058.10.0uncharacterized protein LOC110818466
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2C9W2L40.0A0A2C9W2L4_MANES; Uncharacterized protein
STRINGevm.model.supercontig_25.1240.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-161GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]