PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2461.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 338aa    MW: 36645 Da    PI: 5.2085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2461.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.42e-2841135186
                      trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                   rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ +
  evm.model.supercontig_2461.1  41 RWTRQEILVLIQGKRVAENRVRRGRtagmafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIK 121
                                   8**********************97778888888*********************************************** PP

                      trihelix  73 sessstcpyfdqle 86 
                                   +e++s +++ ++l+
  evm.model.supercontig_2461.1 122 EETESFWVMRNDLR 135
                                   999999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-1241131No hitNo description
PROSITE profilePS500906.441107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.7E-541106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEQLSLVS NPVDGVTNGV EGRPASTDGG DDGSRAPRLP RWTRQEILVL IQGKRVAENR  60
VRRGRTAGMA FGSGQVEPKW ASVSSYCKRH GVNRGPVQCR KRWSNLAGDF KKIKEWESQI  120
KEETESFWVM RNDLRRERKL PGFFDKEVYD ILDGGTAVTT PGLALALAPA PAASGVAEEA  180
EAVFDSGRSA AAEDGLFSDF EQEEATGSPD KDAAKPVAAP VPISVSEKQY QQSPLGACPG  240
QGAVDDKQPA SVPEIGSTSQ EQRKRKRLAT DGDEEMSNLQ SQLIDILERN GKILTAQLEA  300
QNNNLQLDRE QRKDHADSLV AVLNKLADAL GRIADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887986.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-135ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A067JH781e-179A0A067JH78_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_2461.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-127Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]