PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_235.9

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 423aa MW: 47450.4 Da PI: 9.9924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_235.9	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	306	329	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C+++F+++ ++ +H + H evm.model.supercontig_235.9 306 YTCPKCKEVFNTSLLFATHVLRaH 329 9******************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	308	329	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MAANFKSSFS LNSNSISSHP NYHVNGVDNN MNCFFNSGSQ SSLLRSNVNY HVNQRNIMAN 60 SRFNFTNSST RFTQNPILFP KNNLGVGQTG IINQMMGQDM GRIFDSYPTR VHIQNYIDRV 120 PLQNQPDIAE VFVTEVVRKS FLTSNPAELQ LSVPSFNNLI GYQQPLGAYS NIENQLTGIT 180 MPNPMMLARN VNSFPVTHHY PHNFSPNSSP FNYPNDRDLF RMKNKILIAQ SLSNGVFGNN 240 NNILNAQPLK ILPTLSRMSA NSIRDGSQQT RVPNNPDGDH HQSKSDVDES YDGVTHSLPC 300 NKYGPYTCPK CKEVFNTSLL FATHVLRAHY KYETSEERQM RKAAKNRNKK PRRLHIINTP 360 NGLTVAPKKF KATWMNYFDV RTPGGGGQAF ENTVGVKIKE DIISPNENAS PIVAVKKEVT 420 DN*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MAANFKSSFS LNSNSISSHP NYHVNGVDNN MNCFFNSGSQ SSLLRSNVNY HVNQRNIMAN  60
SRFNFTNSST RFTQNPILFP KNNLGVGQTG IINQMMGQDM GRIFDSYPTR VHIQNYIDRV  120
PLQNQPDIAE VFVTEVVRKS FLTSNPAELQ LSVPSFNNLI GYQQPLGAYS NIENQLTGIT  180
MPNPMMLARN VNSFPVTHHY PHNFSPNSSP FNYPNDRDLF RMKNKILIAQ SLSNGVFGNN  240
NNILNAQPLK ILPTLSRMSA NSIRDGSQQT RVPNNPDGDH HQSKSDVDES YDGVTHSLPC  300
NKYGPYTCPK CKEVFNTSLL FATHVLRAHY KYETSEERQM RKAAKNRNKK PRRLHIINTP  360
NGLTVAPKKF KATWMNYFDV RTPGGGGQAF ENTVGVKIKE DIISPNENAS PIVAVKKEVT  420
DN*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_235.9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887734.1	1e-175	uncharacterized protein LOC110806991
STRING	evm.model.supercontig_235.9	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10138	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	1e-15	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_235.9