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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_235.5 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
C3H |
| Protein Properties |
Length: 271aa MW: 28512.4 Da PI: 8.6307 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_235.5 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.5 | 1.1e-08 | 78 | 103 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck+Gd+C+FaHg+
evm.model.supercontig_235.5 78 KTRMCNKYNTAEGCKFGDKCHFAHGE 103
89**********************96 PP
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| 2 | zf-CCCH | 27.9 | 4e-09 | 237 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f + G C +GdrC+FaHg+
evm.model.supercontig_235.5 237 FKTKLCDNFTK-GCCTFGDRCHFAHGM 262
69*********.*************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.042 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-6 | 10 | 35 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.9E-7 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-8 | 74 | 107 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.31 | 76 | 104 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.8E-14 | 76 | 108 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.025 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.3E-5 | 78 | 103 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 3.21E-15 | 135 | 216 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 8.5E-16 | 143 | 213 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 7.4E-12 | 143 | 213 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.194 | 144 | 208 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.9E-11 | 146 | 210 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 6.59E-14 | 148 | 208 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-15 | 234 | 267 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.211 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 236 | 266 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.0E-7 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.1E-7 | 237 | 262 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MESFPSGIGS KSKPCTKFFS TSGCPFGEGC HFLHYVPGGF KTVSQMLNLG GNAAIPPAPR 60
NPVVPPSFAD GSSPTTVKTR MCNKYNTAEG CKFGDKCHFA HGEWELGKPS GPAYEDPHAM 120
GPGRMGGRIE PPQGHGAAAS FGASATAKIS VDASLAGAII GKNGVNSKQI CRVTGAKLSI 180
REHETDPNLR NIELEGTFDQ IKQASAMVRE LIVNVSSGSG MSMKNQSMLG SGPSNNFKTK 240
LCDNFTKGCC TFGDRCHFAH GMEELRKSGM *
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