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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_235.4 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
C3H |
| Protein Properties |
Length: 300aa MW: 31650.8 Da PI: 9.5271 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_235.4 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.2 | 1.3e-08 | 106 | 131 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck+Gd+C+FaHg+
evm.model.supercontig_235.4 106 KTRLCNKYNSAEGCKFGDKCHFAHGE 131
8***********************96 PP
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| 2 | zf-CCCH | 35.7 | 1.5e-11 | 266 | 290 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +G+rC+FaHg
evm.model.supercontig_235.4 266 FKTKLCENFAK-GSCTFGERCHFAHG 290
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.7 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.41E-6 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.8 | 45 | 62 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 102 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 103 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0014 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.535 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 3.21E-15 | 166 | 245 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 8.0E-12 | 171 | 241 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 5.2E-16 | 172 | 240 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.466 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 2.3E-11 | 174 | 238 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.67E-14 | 176 | 236 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 4.4E-16 | 263 | 296 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.8E-7 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.3E-8 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.718 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.2E-9 | 266 | 290 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MEFGAGRKRG RYEAAFNGNG NIKKSKQDMD SFTTGIGSKS KPCTKFFSTS GCPFGEGCHF 60
LHYVPGGFKA VSQMLNLGTN PALPSAPRNA VVPPSFPDGS SPPAVKTRLC NKYNSAEGCK 120
FGDKCHFAHG EWELGKPSAL AYEDPRAMGH GRMAGRIEQP QGLAAAASFG ASATAKISVD 180
ASLAGAIIGK NGVNSKQICR VTGAKLSIRE HETDSNLRNI ELEGTFDQIK QASAMVRELI 240
VNVGAASAMP ARNHHGTTGS AASNNFKTKL CENFAKGSCT FGERCHFAHG AEELRKSGM*
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