PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_235.19

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 611aa MW: 66758.3 Da PI: 10.2244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_235.19	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	438	460	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C +F ++ + +H ++H evm.model.supercontig_235.19 438 YQCPKCESVFDTSQKFATHVSKH 460 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.58	438	465	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	440	460	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MSSSKHANPS TSTNPPPPSE AAAGASSSRL PPSPIPISSN HANPSASTNP PPPPMAATGG 60 TPSPIPVRVR SSSNHANPLT LRNPPPPSMA AAGPFPVRFR APYPRVPTMI NCRHPPPPPP 120 SRPLVRTNSP TVLELAADPN TIYRRLPSPA VARLYGYRMP FYHHSPSPVR QPPRTSAPMA 180 AARQPSNPSP NQSPNLGVGQ MRPRMMTEPW RRDLEARTLQ FIPLPASTKR RADFDLPVTV 240 KTEPETSDQN VPVRPPGFSG PRLVNSAVNA IGEAWLRKKG HFPSYGGSSS SPQVDHVLNN 300 IVQALKPGPV VIREPNQRGP VVIREPTHQR PVVIRESNQI NTNNPLLQFV PHHGRGNNND 360 NDYDSSNLPQ DAIFISDEED VNFSGGDSTD SEATISIDPQ VLYRKKDKGI KIEEEVTSRD 420 TSYEGGIHSL NHPKHGPYQC PKCESVFDTS QKFATHVSKH YKLESKEERR RRRLARRKLP 480 KLQVIKTSYG ITIGRADKLP LWSQELQPAV PGHDQSHEVT FAMFRVPVES QQVQNQEPPF 540 AVPVGNQNRE ATLAMFRVPV GNQQGHAQEL AGLTRVLPVA EAMVYGGGGG SVDQGQALVL 600 AQVKEEMEHI *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MSSSKHANPS TSTNPPPPSE AAAGASSSRL PPSPIPISSN HANPSASTNP PPPPMAATGG  60
TPSPIPVRVR SSSNHANPLT LRNPPPPSMA AAGPFPVRFR APYPRVPTMI NCRHPPPPPP  120
SRPLVRTNSP TVLELAADPN TIYRRLPSPA VARLYGYRMP FYHHSPSPVR QPPRTSAPMA  180
AARQPSNPSP NQSPNLGVGQ MRPRMMTEPW RRDLEARTLQ FIPLPASTKR RADFDLPVTV  240
KTEPETSDQN VPVRPPGFSG PRLVNSAVNA IGEAWLRKKG HFPSYGGSSS SPQVDHVLNN  300
IVQALKPGPV VIREPNQRGP VVIREPTHQR PVVIRESNQI NTNNPLLQFV PHHGRGNNND  360
NDYDSSNLPQ DAIFISDEED VNFSGGDSTD SEATISIDPQ VLYRKKDKGI KIEEEVTSRD  420
TSYEGGIHSL NHPKHGPYQC PKCESVFDTS QKFATHVSKH YKLESKEERR RRRLARRKLP  480
KLQVIKTSYG ITIGRADKLP LWSQELQPAV PGHDQSHEVT FAMFRVPVES QQVQNQEPPF  540
AVPVGNQNRE ATLAMFRVPV GNQQGHAQEL AGLTRVLPVA EAMVYGGGGG SVDQGQALVL  600
AQVKEEMEHI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_235.19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	evm.model.supercontig_235.19	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	4e-16	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_235.19