PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_233.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 543aa    MW: 59046.4 Da    PI: 6.8962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_233.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11175231155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  evm.model.supercontig_233.1 175 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 231
                                  57*******************5444.2455536655.779999**************98 PP
2AP247.15.8e-15274325155
                          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm.model.supercontig_233.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 325
                                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-9175231IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-15175241IPR016177DNA-binding domain
CDDcd000183.63E-19175241No hitNo description
Gene3DG3DSA:3.30.730.102.4E-12176240IPR001471AP2/ERF domain
PROSITE profilePS5103217.477176239IPR001471AP2/ERF domain
SMARTSM003804.1E-23176245IPR001471AP2/ERF domain
PRINTSPR003672.4E-6177188IPR001471AP2/ERF domain
PfamPF008477.1E-10274325IPR001471AP2/ERF domain
CDDcd000181.95E-24274335No hitNo description
SuperFamilySSF541717.85E-18274335IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-18275334IPR001471AP2/ERF domain
PROSITE profilePS5103219.045275333IPR001471AP2/ERF domain
SMARTSM003801.3E-32275339IPR001471AP2/ERF domain
PRINTSPR003672.4E-6315335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDSSSPHNWL AFSLSNNHIN LPSSSSTSAD HDSSQLCLFE AFTTANTNPG NVLDGQVQED  60
DAVTAGATDL SIFTAGPKLE DFLGGSATAT TGPTPPQLGH FSTETSNTVT VSDTEIYESE  120
LKTIAASFLR GFSSSDHQQT DHTQKQHQLL QHQQQLVHAE PAPKKAVDTF GQRTSIYRGV  180
TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR AYDLAALKYW GPTTTTNFPI  240
SNYEKELEEM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDIK SIANSNLPIG GISNKSKNSS  360
DSASDTKSLD AGSRSDDRDL SSASSVAFAS HPHPTSATSG SNLSFAIPIK QDPTDYWSNI  420
LGYKNQPPTT LFQSSANFQT ASASNFIDHY NETNNGLYVS GGYNAVQQQQ NGGVFGAHHH  480
STPPSSSSIP FATPITLNGG VNSSYEGSSG YGSWNNIAPS LHSFQTVKSN LSVFQTPIFG  540
ME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912744.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-163AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU40.0A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGevm.model.supercontig_233.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-143AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]