PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | AP2 | ||||||||
Protein Properties | Length: 543aa MW: 59046.4 Da PI: 6.8962 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.6 | 1.1e-11 | 175 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g evm.model.supercontig_233.1 175 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 231 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 5.8e-15 | 274 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.supercontig_233.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 325 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-9 | 175 | 231 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-15 | 175 | 241 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.63E-19 | 175 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-12 | 176 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 176 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-23 | 176 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 177 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-10 | 274 | 325 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-24 | 274 | 335 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 274 | 335 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 275 | 334 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 275 | 339 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDSSSPHNWL AFSLSNNHIN LPSSSSTSAD HDSSQLCLFE AFTTANTNPG NVLDGQVQED 60 DAVTAGATDL SIFTAGPKLE DFLGGSATAT TGPTPPQLGH FSTETSNTVT VSDTEIYESE 120 LKTIAASFLR GFSSSDHQQT DHTQKQHQLL QHQQQLVHAE PAPKKAVDTF GQRTSIYRGV 180 TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR AYDLAALKYW GPTTTTNFPI 240 SNYEKELEEM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDIK SIANSNLPIG GISNKSKNSS 360 DSASDTKSLD AGSRSDDRDL SSASSVAFAS HPHPTSATSG SNLSFAIPIK QDPTDYWSNI 420 LGYKNQPPTT LFQSSANFQT ASASNFIDHY NETNNGLYVS GGYNAVQQQQ NGGVFGAHHH 480 STPPSSSSIP FATPITLNGG VNSSYEGSSG YGSWNNIAPS LHSFQTVKSN LSVFQTPIFG 540 ME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_233.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912744.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-163 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A061GPU4 | 0.0 | A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative | ||||
STRING | evm.model.supercontig_233.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-143 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_233.1 |
Publications ? help Back to Top | |||
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