PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_23.81 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | CPP | ||||||||
Protein Properties | Length: 186aa MW: 19519.2 Da PI: 8.8658 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.4 | 4.5e-16 | 4 | 43 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks C kkYCeCf+a+ Cse+CkC dCkN e evm.model.supercontig_23.81 4 KHNKGCHCKKSGCFKKYCECFQANILCSENCKCLDCKNFE 43 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 19.958 | 1 | 44 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-18 | 4 | 45 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 7 | 42 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MLGKHNKGCH CKKSGCFKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGDHANNM 60 AYIQQAANAA ITGAIGSSGY ASPPVSKRRK GQELLFGPAA KDPSISRIGH FQQANNIRAA 120 APSSSLSSVS VARAGGNAAS GSSKFTYRSL LADIIQPQDL KELCSVLVVV AGEAAKSLAG 180 SITLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 9e-16 | 4 | 53 | 83 | 132 | Protein lin-54 homolog |
5fd3_B | 9e-16 | 4 | 53 | 83 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_23.81 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903130.1 | 1e-126 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 4e-91 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1Q3CDW5 | 1e-106 | A0A1Q3CDW5_CEPFO; CXC domain-containing protein | ||||
STRING | evm.model.supercontig_23.81 | 1e-133 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 | Representative plant | OGRP1469 | 17 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 5e-81 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_23.81 |