PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_23.65
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 365aa    MW: 39604.4 Da    PI: 7.4142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_23.65genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000482282661255
                                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  evm.model.supercontig_23.65 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 266
                                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.414216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-10226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.15E-6226270No hitNo description
Gene3DG3DSA:4.10.280.103.1E-7230272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMAGNPN WWNMNGVRPM VIPPLTSTHQ QPPSPFLPPP PTLFPHHYTL  60
NPSSSSSSSS VFPLPSWHGS PDQLPESWSQ LLLGGLVGEE EKAAMGHFQA KKLESWEEQV  120
LHQPPNGGGV VEVKQENSAS SFVYGHANED FQAKPTWSHH HQVMPVSSPK SCVTTFSSNM  180
LDFSTNNKSD GRHPPPDRSS ECNSPASGGA VKKARVQASS SQPTFKVRKE KLGDRITALH  240
QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSLPYLGSA SSNIRHQQSV QGERNCVFPE  300
DPGQLLNDNC MKRKAGAAEQ DGHEEPKKDL RSRGLCLVPV SCTLQVGSDN GADYWAPALG  360
GGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_23.65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903268.10.0transcription factor bHLH68 isoform X1
SwissprotQ8S3D11e-109BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2C9UAT70.0A0A2C9UAT7_MANES; Uncharacterized protein
STRINGevm.model.supercontig_23.650.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]