PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_23.117
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 345aa    MW: 40202.4 Da    PI: 4.549
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_23.117genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.13.9e-12111195286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   Wt++e  +L+e+ +++  +l+r++l+  +W +v++k+ +e  + ++  qC++  ++l+++ykk+k   +k+   +ss++++
  evm.model.supercontig_23.117 111 WTEHEAFVLLEVWSDRFLQLGRRSLRSEDWIDVADKVsEELRIDKKKAQCRQLVDKLKRKYKKEKVKVEKQ-GLNSSKWVF 190
                                   *************************************778899*********************9888874.79999**** PP

                      trihelix  82 fdqle 86 
                                   f++++
  evm.model.supercontig_23.117 191 FRKMD 195
                                   ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-17111197No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGDTDDDERY LQKSHSSNLK KHLFYSHPIQ KLNDYYLEGE DDDADNEDEC NDYFEQKGNE  60
NGAQRDNPNG YYPNFEENDG FNRYPKRQKL RNSIPGNEFA LASDAKLFDG WTEHEAFVLL  120
EVWSDRFLQL GRRSLRSEDW IDVADKVSEE LRIDKKKAQC RQLVDKLKRK YKKEKVKVEK  180
QGLNSSKWVF FRKMDMLMGS SSRQESGLAC GVDSGEFVFM NTRVYLDRSN GFDEMVDSPD  240
GSEIEDNDEE GDGDYGRRGG IRKERSSCRL LADSVQKFGE IYEKIEISKK AQMMELEKMR  300
LEFRKELELQ KKHILERVEA EIAKIQEEDG EEENDDVSTE SLSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_23.117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903220.10.0trihelix transcription factor ASIL1
TrEMBLA0A1J7HT661e-109A0A1J7HT66_LUPAN; Uncharacterized protein
STRINGevm.model.supercontig_23.1170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-92Trihelix family protein