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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_23.117 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
Trihelix |
| Protein Properties |
Length: 345aa MW: 40202.4 Da PI: 4.549 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_23.117 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 38.1 | 3.9e-12 | 111 | 195 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
Wt++e +L+e+ +++ +l+r++l+ +W +v++k+ +e + ++ qC++ ++l+++ykk+k +k+ +ss++++
evm.model.supercontig_23.117 111 WTEHEAFVLLEVWSDRFLQLGRRSLRSEDWIDVADKVsEELRIDKKKAQCRQLVDKLKRKYKKEKVKVEKQ-GLNSSKWVF 190
*************************************778899*********************9888874.79999**** PP
trihelix 82 fdqle 86
f++++
evm.model.supercontig_23.117 191 FRKMD 195
****8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13837 | 3.6E-17 | 111 | 197 | No hit | No description |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGDTDDDERY LQKSHSSNLK KHLFYSHPIQ KLNDYYLEGE DDDADNEDEC NDYFEQKGNE 60
NGAQRDNPNG YYPNFEENDG FNRYPKRQKL RNSIPGNEFA LASDAKLFDG WTEHEAFVLL 120
EVWSDRFLQL GRRSLRSEDW IDVADKVSEE LRIDKKKAQC RQLVDKLKRK YKKEKVKVEK 180
QGLNSSKWVF FRKMDMLMGS SSRQESGLAC GVDSGEFVFM NTRVYLDRSN GFDEMVDSPD 240
GSEIEDNDEE GDGDYGRRGG IRKERSSCRL LADSVQKFGE IYEKIEISKK AQMMELEKMR 300
LEFRKELELQ KKHILERVEA EIAKIQEEDG EEENDDVSTE SLSE*
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