PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2145.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 434aa    MW: 50120.6 Da    PI: 6.4737
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2145.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.51.3e-26118209184
                      trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                                   +Wt+++v++Li+a+++++e+ +++        +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ ++
  evm.model.supercontig_2145.1 118 KWTDKMVRLLITAVSYIGEDASSDYrrkfsvlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSC 198
                                   7**************99999997633446677**********************************************558 PP

                      trihelix  74 essstcpyfdq 84 
                                   +++++ +++d 
  evm.model.supercontig_2145.1 199 QVVENPVLLDL 209
                                   88888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-24116237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEGGLSQGGM IPGGSSFSGL DLQTSIRVHN QPQHPTTIHQ HHHRQGSSVH PSLHEGFPLT  60
MGSMQGCDQT MSMADYNKVE RGKNSVSDED EPSFTEEGGD GHNDPNKGKK GSPWQRVKWT  120
DKMVRLLITA VSYIGEDASS DYRRKFSVLQ KKGKWKSVSK VMAERGYHVS PQQCEDKFND  180
LNKRYKKLND MLGRGTSCQV VENPVLLDLI DFLSEKEKDD VRKILSSKHL FYEEMCSYHN  240
GNRLHLPHDP ALQRSLQLAL RSRDDHDNDD LRRHQNDDPD EEDQEVEADE HDEYEEHRGL  300
HAGVSGSLKR SRQGQGQEDV CFPNSWNSQD CNKGPYPHQH TCQTDTNQVL TESSRAAWLQ  360
KQWIESRSLQ IEEQKLQIQA DMLELEKQRF KWERFSKKRD RELERMRMEN ERMKLENERM  420
ALELKRRELG GDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889065.10.0uncharacterized protein LOC110808035
TrEMBLA0A1R3FYZ50.0A0A1R3FYZ5_9ROSI; Putative transcription factor
STRINGevm.model.supercontig_2145.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-117sequence-specific DNA binding transcription factors