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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_212.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 147aa MW: 16289.5 Da PI: 10.5979 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs++ L H +H evm.model.supercontig_212.14 60 FECKACKKTFSSHQALGGHRASH 82 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.9E-6 | 57 | 86 | No hit | No description |
Pfam | PF13912 | 8.7E-10 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.471 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MANCLMMLSN STADDQSSES ATSKEEQEIR RVKFKSSLNS SAPILEKKKK FSDWISKGMF 60 ECKACKKTFS SHQALGGHRA SHKKVKGCFA ARVHQVDRLA DQERHDVMRS FDQGTSSNIT 120 TATITITSST LNKKKSKVHR TGFGWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_212.14 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887095.1 | 1e-94 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A061DW89 | 3e-29 | A0A061DW89_THECC; C2H2-type zinc finger family protein | ||||
STRING | evm.model.supercontig_212.14 | 1e-103 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13535 | 6 | 16 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 4e-13 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_212.14 |