PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.69
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 192aa    MW: 20926.4 Da    PI: 4.8934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.69genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-191565155
                          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 s y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa+a++ a++ ++g
  evm.model.supercontig_21.69 15 SSYRGVRKRK-WGKWVSEIREP---GKKSRIWLGSFETPEMAAAAYDVAALHFRG 65
                                 67*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-231573No hitNo description
PfamPF008473.7E-121565IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-231574IPR016177DNA-binding domain
SMARTSM003802.8E-401679IPR001471AP2/ERF domain
PROSITE profilePS5103224.1181673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-321674IPR001471AP2/ERF domain
PRINTSPR003675.2E-101728IPR001471AP2/ERF domain
PRINTSPR003675.2E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEEIGSSSNP RGTSSSYRGV RKRKWGKWVS EIREPGKKSR IWLGSFETPE MAAAAYDVAA  60
LHFRGRDARL NFPQLVNDLP KPISSDADDI RLAAHSAAVR IRTTPSSGST STGAAEGSPG  120
GPVGNAAPIT VRLSPSQIQA INESPLDSPK MWMQMAGALM LDDDVSSMRF PYEMDMEENE  180
WEDLQTSLWD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171777667ATERF1
3gcc_A1e-171777667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.69
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903571.11e-138ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-58ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S3CB313e-76A0A1S3CB31_CUCME; ethylene-responsive transcription factor ERF021
STRINGevm.model.supercontig_21.691e-137(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-57ERF family protein