PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.168
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 427aa    MW: 49150.7 Da    PI: 7.2531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.168genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05169192123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C+ Cg+ ++++ +Lk+H r  H
  evm.model.supercontig_21.168 169 YVCGVCGRKCKTSLDLKKHFRQlH 192
                                   9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.3E-689159IPR029060PIN domain-like
SuperFamilySSF576674.82E-5162200No hitNo description
SMARTSM003550.0073169192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011169197IPR007087Zinc finger, C2H2
PROSITE patternPS000280171192IPR007087Zinc finger, C2H2
CDDcd061674.20E-12183323No hitNo description
Gene3DG3DSA:3.40.50.10101.3E-6254320IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSSLCNSLDT LPLKPLSMHR TDLLFSRSPY LSFLAPSLNN HKLTITLRPP LTNPRVIYRP  60
CLIRSSSSSS ASTSDIDMVR NKEGIYTPNQ SKVVVLWDLD NKPPRGPPYE AAMALRQVAQ  120
RFGDIVEISA YANRHAFIHL PQWVLQERRE RKQLNILERK GVVTPSEPYV CGVCGRKCKT  180
SLDLKKHFRQ LHERERQKKF NRMRSLKGKK RQKYKEKYIT GNHKYNEAAR SLITPKVGYG  240
LASELRRAGV FVKTVEDKPQ AADWALKRQM QHSMTRGIDW LFLVSDDKDF VEMLRKARDA  300
NLGTVVVGDW DRALGRHADL WVPWVEVENG GLTEKDLMPE KRRRQDLEEE GVLFSVSCFD  360
GERDLDRVVD ELVVQRTEFG GARISAFSEG EEDDDDEWVT EEDWDNEDYL LRASEDEITE  420
GEDGYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903420.10.0uncharacterized protein LOC110818755
RefseqXP_021903421.10.0uncharacterized protein LOC110818755
RefseqXP_021903423.10.0uncharacterized protein LOC110818755
RefseqXP_021903424.10.0uncharacterized protein LOC110818755
TrEMBLA0A067GWV60.0A0A067GWV6_CITSI; Uncharacterized protein
TrEMBLV4V7880.0V4V788_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_21.1680.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-161C2H2-like zinc finger protein