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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 377aa MW: 41026.2 Da PI: 9.9433 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 304 | 361 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh+ evm.model.supercontig_21.159 304 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEGDHNHT 361 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-17 | 255 | 300 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-33 | 290 | 363 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.605 | 297 | 363 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-27 | 300 | 363 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-37 | 302 | 362 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 304 | 360 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAVELMMGYG GDSFAAASPA RMDENALREA ASAGIQGVEE VIRLLSQSQP RDKQQLYQES 60 SPSSSLSPPP AVEIKAVADV AVNNFKKMIS LLGRSRTGHA RFRRAPAVQI HPQQQPEQQQ 120 QSQPKFQTQS NHQDPGPSVS VPSATYHQTT EQGSAFRVYC PTPLHRLPPL PHNHHHNKSN 180 PHLGVTKSGF VERNDAHGTI NFSPSPSISA ATSFMSSLTG ETDSIQRSLS SGFQFTNPSH 240 VASSGKPPLS CSSLKRKCSS MDDAALKCGS SSSRCHCSKK RKSRVKRVIR VPAISNKMAD 300 IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERALDDPMML IVTYEGDHNH 360 TQPAAEMPAA IVLESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 290 | 363 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.159 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903598.1 | 0.0 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-127 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A140H8K5 | 1e-170 | A0A140H8K5_MANES; WRKY transcription factor 1 | ||||
STRING | evm.model.supercontig_21.159 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 | Representative plant | OGRP8844 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 5e-92 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.159 |