PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.106
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 249aa    MW: 28437.5 Da    PI: 10.2977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.106genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11125166351
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                    +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  evm.model.supercontig_21.106 125 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 166
                                   79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-4124181IPR001471AP2/ERF domain
PfamPF008476.1E-6124167IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-8125169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-6127171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSFV TPLPKSSDNG LALENSSQNA NPVSVHPMPL EDVNLKEETT  60
VAKVGLDHQN FLVPAYQKIR KMKILQIISY GPTTGIYIKR DMGPPIKRRK RHRRKQVQNQ  120
EPCLMRGVYF KNMKWQAAIK VDKKQIHLGT VGSQEEAARL YDRAAFMCGR EPNFELSEEE  180
KQELRKFNWD EFLTMTRRAI TNKKYKRRVG SGAQQRTEHP LQNGEWDSKN SVDGSSASEE  240
MEPESSTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903510.11e-127ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB9GQL71e-101B9GQL7_POPTR; ERF family protein
STRINGevm.model.supercontig_21.1060.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-50ERF family protein