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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_21.100 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
LBD |
| Protein Properties |
Length: 233aa MW: 24956.2 Da PI: 8.6603 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_21.100 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 96.2 | 3.4e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76
+C++C+vlr++C+++Cvl+ ++ +++q +++ +++k+FG+s +++l++a+p+++r+++++sl+yeA+ r+ +Pv+Ga
evm.model.supercontig_21.100 2 SCNGCRVLRKGCSENCVLRSCLhwiesAEAQGNATLFLAKFFGRSDLMSLISAVPQSQRPALFQSLLYEACGRTVNPVNGA 82
6*********************9999777889************************************************* PP
DUF260 77 vgvilklqqqleqlkaelallk 98
vg++++++++++q+++e++l++
evm.model.supercontig_21.100 83 VGLLSTGNWHVCQAAVETVLAG 104
****************998876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSENCVLR SCLHWIESAE AQGNATLFLA KFFGRSDLMS LISAVPQSQR 60
PALFQSLLYE ACGRTVNPVN GAVGLLSTGN WHVCQAAVET VLAGGPLRPI PGVLTGAWTA 120
NSNESSDGFS AVACTGRSAY PQSSRPSITS HASWEGREPS DLGLSLTLRG RRGRGRSCSQ 180
VERPNVYPQP SFYSGESEVT TMTMRTTASF EGGGDDRRMR GVSERKLLNL FV*
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