 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_209.41 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 239aa MW: 26785.5 Da PI: 10.5501 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_209.41 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 39.7 | 1.3e-12 | 15 | 110 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekkr 71
+W+++ + +Lie ++ +l+rg+l++++W+ev++++ + + r+ +qCk++++ l+k+yk +k++ +
evm.model.supercontig_209.41 15 CWSEDATFTLIESWGDRFLQLNRGNLRQKHWQEVANAVndrhvhvsaaGKPQPFRTDIQCKNRIDTLKKKYKIEKARVLDS 95
7*************************************88888887653333357889***************99987666 PP
trihelix 72 tsessstcpyfdqle 86
+s++ +f l+
evm.model.supercontig_209.41 96 GGSYTSSWLFFPGLD 110
566667899998887 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MDAVAGTPSS GRDDCWSEDA TFTLIESWGD RFLQLNRGNL RQKHWQEVAN AVNDRHVHVS 60
AAGKPQPFRT DIQCKNRIDT LKKKYKIEKA RVLDSGGSYT SSWLFFPGLD ALLGPNFPTA 120
GTSPPVTIPK FTPPALAISP IPSSRSSGGS GSTRRRKRTR TVESEVGYRE LADAIDRLGE 180
IYKRVEERKQ KQMVELEKHR MQFAKDLECQ RMQLFVETQV QLHKLKRAAA KRSSAGKT*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 5e-52 | sequence-specific DNA binding transcription factors |
