PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2070.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 354aa    MW: 39526.6 Da    PI: 5.8443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2070.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065426123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  +kC  C ksFs+   L  H+r+H
  evm.model.supercontig_2070.1  4 HKCRLCFKSFSNGRALGGHMRSH 26
                                  79********************9 PP
2zf-C2H213.40.00024232254123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ykC+ C+k+F++   L  H  +H
  evm.model.supercontig_2070.1 232 YKCETCKKVFKSYQALGGHRASH 254
                                   9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-5327IPR007087Zinc finger, C2H2
SuperFamilySSF576674.33E-8326No hitNo description
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.33E-8227254No hitNo description
PfamPF139126.7E-11232256IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866232259IPR007087Zinc finger, C2H2
SMARTSM003550.023232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058283305IPR007087Zinc finger, C2H2
PfamPF139126.7E-11283305IPR007087Zinc finger, C2H2
SMARTSM003550.43283305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MERHKCRLCF KSFSNGRALG GHMRSHMLNL PIPPKPQVEV EEQVKEEEEE DVNQVSEDAE  60
SASSSSSSSE EEEGGEEKGQ FYGLRENPKR SIRLGDPEFS FAAVDAGSVI LQDRESETES  120
SKNPTRRRSK RTGKSEHHHR RFEENAKKFK SNPPSATKSE SWAEPEPVSS ISGTTTEEDV  180
AFCLMMLSRD NKWKNRVEED EDQQRGEAEK SMEETDESYG FKSIKTPNRG KYKCETCKKV  240
FKSYQALGGH RASHKKNKQS NEPQMGQENA AGTCSSTAEK KIHECPVCLR IFSSGQALGG  300
HKRSHGVSLV ETPAKSCTSF IDLNLPAPID DEELSQIELS AVSDAEFVNQ MNR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889337.10.0zinc finger protein ZAT9-like isoform X1
RefseqXP_021889347.10.0zinc finger protein ZAT9-like isoform X1
RefseqXP_021889355.10.0zinc finger protein ZAT9-like isoform X1
TrEMBLA0A2C9WPI61e-140A0A2C9WPI6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_2070.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-64C2H2-like zinc finger protein