PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_20.95
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 627aa    MW: 71181.7 Da    PI: 5.7917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_20.95genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13383426755
                                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +Er+RR+++N+++  Lr l+Pk +      Kl+Ka+iL  A+eY+++Lq
  evm.model.supercontig_20.95 383 VAERKRRKKLNDRLYALRVLVPKiS------KLDKASILGDAIEYVQELQ 426
                                  68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-209164IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-17374439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.929376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12378428No hitNo description
SMARTSM003532.2E-16382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11383426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17383439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MNVVLENLVR RLRPLVGSKA WDYCVVWKLS ENQRFIEWVG CCCGGSERIN INEDGVEEGL  60
LHCHGQSQVL SCRDVMVDHP NSKSCELLSQ LPSSIPLTDS GIHAQTLISN RPSWLFSHNS  120
DSDHSIEVIK ETVGTRVFVP VIGGLIELFV TKQVYEDQNV IDFIISQCNI STEQETLIMN  180
SRNMDSNFQV TISNLQYSLD ELESKPFLPN DQNDHDDPND MNHHVHQQPV SSATENSILT  240
GLAACENISI DRLHLCSPDP MDLLQQFNYS NSDHKMSDAA AAFFEVHDDQ SSFASDKAMI  300
NIHPFKLDDN NKLQDNFDHH DTSTTKDHHH HHHHQHHQQG NEIKQENGRS DSISDCSDQN  360
DDEDIDAKNR RGNGKGHQAK NLVAERKRRK KLNDRLYALR VLVPKISKLD KASILGDAIE  420
YVQELQKQAK ELQDELEAQN ESDDDDDDDG ASKRTGMVNG NHNMINESEI FNQHGIMNIG  480
SKPDHHVKAP NGLIHVGASS CINNESHVLK ESLQDSEMTS DKGQQMEKHG GFTRLLEALD  540
CLGLEVTNAN VTSFRCLVSN VFQVKKRESE MVEADDVRES LLEVTRNQWR GWMPEMAKAR  600
DHHHHYHHSH HNNFLIQNHH LHHYHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13374444273Transcription factor MYC2
5gnj_B5e-13374444273Transcription factor MYC2
5gnj_E5e-13374444273Transcription factor MYC2
5gnj_F5e-13374444273Transcription factor MYC2
5gnj_G5e-13374444273Transcription factor MYC2
5gnj_I5e-13374444273Transcription factor MYC2
5gnj_M5e-13374444273Transcription factor MYC2
5gnj_N5e-13374444273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384391ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_20.95
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903666.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2I4GCB41e-180A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGevm.model.supercontig_20.950.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-124bHLH family protein