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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_20.86 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19077.2 Da PI: 11.7747 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.4e-22 | 17 | 60 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i ks rqvtfskRr+g++KKA+EL++LC+ae+a+++fs+ k evm.model.supercontig_20.86 17 KIAKKSHRQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPACK 60 68899***********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.94E-27 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.207 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.12E-32 | 9 | 78 | No hit | No description |
PRINTS | PR00404 | 9.5E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-24 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAKKTASMGR QRIPIAKIAK KSHRQVTFSK RRAGLFKKAS ELCTLCGAEI AIVVFSPACK 60 AFSFGHPEVE SIVDRFLTKN PPPNQPTNAA HQLVEAHRNA NRRKRGEKSL SLRRMLAGDI 120 AGGRIRWKNL RLNQLQQLKN ALEELKKNVG RQLTGFWFSL QSFGVDGNGG Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 8 | 96 | 1 | 87 | MEF2C |
5f28_B | 3e-18 | 8 | 96 | 1 | 87 | MEF2C |
5f28_C | 3e-18 | 8 | 96 | 1 | 87 | MEF2C |
5f28_D | 3e-18 | 8 | 96 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_20.86 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903843.1 | 7e-98 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 6e-41 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S2YWY3 | 4e-55 | A0A1S2YWY3_CICAR; agamous-like MADS-box protein AGL61 | ||||
STRING | evm.model.supercontig_20.86 | 1e-123 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-38 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_20.86 |
Publications ? help Back to Top | |||
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