PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NF-YA

Protein Properties

Length: 153aa MW: 16981 Da PI: 10.0823

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_20.45	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.9	1.4e-32	57	113	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e e+k +ksrkpylheSRh hAlrR+Rg+gGrF evm.model.supercontig_20.45 57 EEPVFVNAKQYHGILRRRQSRAKAETENKA-IKSRKPYLHESRHLHALRRARGCGGRF 113 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-36	55	116	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.353	56	116	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-27	58	113	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	59	81	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	61	81	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	90	113	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MKAPGAYPYP DPYYRSIFAP YDAQPYPSQP YAGQPMVHLQ LMGIQQAGVP LPSDAVEEPV 60 FVNAKQYHGI LRRRQSRAKA ETENKAIKSR KPYLHESRHL HALRRARGCG GRFLNSKKNE 120 NQQNEAASGD KSQPSINLNS DKNDITSTNG TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-21	56	121	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_20.45

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903689.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_021903690.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_021903691.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_021903692.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_021903693.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X3
Refseq	XP_021903694.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X3
Refseq	XP_021903695.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X3
Swissprot	Q84JP1	1e-67	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2I4GVD2	5e-99	A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7
STRING	evm.model.supercontig_20.45	1e-110	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-60	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_20.45

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]