PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_2.89

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 611aa MW: 65223 Da PI: 9.6776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_2.89	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H evm.model.supercontig_2.89 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	13.1	0.0003	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ evm.model.supercontig_2.89 148 WKCEKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.9E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.63E-7	71	94	No hit	No description
PROSITE profile	PS50157	10.99	72	94	IPR007087	Zinc finger, C2H2
Pfam	PF12171	3.0E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.63E-7	143	168	No hit	No description
SMART	SM00355	130	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MAAASSSAPF FVAGEDNQNQ MIQVQQHSST TVSSTVPNTA PPKKKRNQPG NPNPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARHPTSL NTLATHHLYG NNHMSLGLTQ VSNNSQISSL 240 QDPNSVPSAA NILRLGSTTT GGGPKFEHLI NPTSTNPSSL QPNLPPSAAA FFLQDANQGL 300 IQDQHGVVSF QNKPIHGLMQ LPDLQSNTTN SPSSANLFNL GFFSNNSSTS SITNSENTNT 360 TNLQNSGFLG ANQFNNGNNG SQGTTSIFSN NLGDHSGSGL SSLYTSSVQH EAISPHMSAT 420 ALLQKAAQMG STTSSNSTST LLRGLSGGGS SSTAGKPDRS IMPTNFGGNF GSNTDQSLRS 480 QIDNDTNLQG LMNSLVNGGS TIFGSGSGGG GGGRQGQDHS FVSFSAGGGM SNFGGVDEAK 540 LHQNLAGSDK LTLDFLGVGG VVRNISGGFS HRDQQQHQQQ LGMNMSSLEQ EAAKSNSQQP 600 TQAFGRTKLH *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MAAASSSAPF FVAGEDNQNQ MIQVQQHSST TVSSTVPNTA PPKKKRNQPG NPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTSL NTLATHHLYG NNHMSLGLTQ VSNNSQISSL  240
QDPNSVPSAA NILRLGSTTT GGGPKFEHLI NPTSTNPSSL QPNLPPSAAA FFLQDANQGL  300
IQDQHGVVSF QNKPIHGLMQ LPDLQSNTTN SPSSANLFNL GFFSNNSSTS SITNSENTNT  360
TNLQNSGFLG ANQFNNGNNG SQGTTSIFSN NLGDHSGSGL SSLYTSSVQH EAISPHMSAT  420
ALLQKAAQMG STTSSNSTST LLRGLSGGGS SSTAGKPDRS IMPTNFGGNF GSNTDQSLRS  480
QIDNDTNLQG LMNSLVNGGS TIFGSGSGGG GGGRQGQDHS FVSFSAGGGM SNFGGVDEAK  540
LHQNLAGSDK LTLDFLGVGG VVRNISGGFS HRDQQQHQQQ LGMNMSSLEQ EAAKSNSQQP  600
TQAFGRTKLH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	144	205	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	144	205	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_2.89

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909907.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_021909908.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_021909909.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-139	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A061EG08	0.0	A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
STRING	evm.model.supercontig_2.89	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4373	26	54
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-120	indeterminate(ID)-domain 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_2.89

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]