PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_2.395

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 195aa MW: 22231.5 Da PI: 10.7642

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_2.395	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.5	9.5e-26	16	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl+W+p+LH++Fveave+LGG+ kAtPk++l+ m+++ L ++h+ SHLQ YR evm.model.supercontig_2.395 16 PRLKWNPTLHQCFVEAVERLGGAFKATPKQLLQKMNIPELNISHLNSHLQLYRA 69 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-22	12	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-9	16	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-19	16	71	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
METNKKVRKY VRSEVPRLKW NPTLHQCFVE AVERLGGAFK ATPKQLLQKM NIPELNISHL 60 NSHLQLYRAK KIKEWEQCED QRKLCKRRVA NSSRALQFGG EESRKRSAQD LHEGQSTSMD 120 GFGETLTLAV APTSMGKRKE KGKAGNGHGH VDLKLSLGTK SKRSSGESLR RNRYYLNNRE 180 QEMGRYLSLF VSPM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_2.395

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	evm.model.supercontig_2.395	1e-143	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-24	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_2.395