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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 97aa MW: 10970 Da PI: 10.8115 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.7 | 2.1e-10 | 3 | 28 | 9 | 34 |
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkg 34 Tpl R+gp +++ LCnaCGl+y+++g evm.model.supercontig_2.17 3 TPLPRNGPPKKPILCNACGLRYKLNG 28 999*****88888***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.33E-6 | 2 | 44 | No hit | No description |
CDD | cd00202 | 1.51E-8 | 3 | 28 | No hit | No description |
Pfam | PF00320 | 9.6E-8 | 3 | 28 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.0029 | 3 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.0E-8 | 3 | 30 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGTPLPRNGP PKKPILCNAC GLRYKLNGAK SLINYVPKQV QLNLTNMKRK WKKLYKNTKR 60 AKPLPQQVVV KIEPVEIDDN SFYVNPLSFP QHNPTT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2.17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | evm.model.supercontig_2.17 | 7e-64 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18902 | 6 | 8 |
Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 6e-11 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2.17 |