PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.169
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 395aa    MW: 45395.9 Da    PI: 4.6989
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.169genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1025.3e-32151152102
                                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                 HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                  Flkk ye++++e+++++isws +n+nsfv++d++ef+ ++Lpk+Fkhsnf+SF+RQLn+Y  + +     + k +++ weF+
  evm.model.supercontig_2.169  15 FLKKCYEMVDNESTDSIISWSqSNNNSFVIWDMTEFSVQLLPKHFKHSNFSSFIRQLNIYAMSWSLAMGFR-KIDTDNWEFA 95 
                                  9********************8899***********************************98887777765.446889**** PP

                                  ESXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                  ++ F +g+k+ll++i r+k+
  evm.model.supercontig_2.169  96 NDGFVRGQKHLLKNISRRKN 115
                                  ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-4811113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-2911113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3311113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2715113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-131538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-135466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-136779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVKSTDDGPV SIAPFLKKCY EMVDNESTDS IISWSQSNNN SFVIWDMTEF SVQLLPKHFK  60
HSNFSSFIRQ LNIYAMSWSL AMGFRKIDTD NWEFANDGFV RGQKHLLKNI SRRKNVQAVD  120
QQKQSQKQDK SVEPWEKIES TGLWKQVEDL KTDKNALGQE LIKLRQHQET ADSKLLRLKD  180
RLQGMEKNQQ QLLSFLVMAM QSPSFLVKLL HPKENNWRMA EAGTILEQET EEDELFPSDG  240
MIVPYQPPVD GTPNPAVTAI TGSQNLSESD SFFDGLKDFC MNSDFMKNFM EENHAPFILP  300
DLYDDFSWEQ LLLTSSLKES IEDPKHDDEG SNDCRVETDS TDSGNHLDKV HDFELLMQQI  360
EKSHDSEKSP TMELLTEKMD HLGSGETNRK RRLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-21211316129Heat shock factor protein 1
5d5v_B2e-21211316129Heat shock factor protein 1
5d5v_D2e-21211316129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909952.10.0heat stress transcription factor A-8 isoform X1
SwissprotQ9S7U51e-117HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A061E9P61e-156A0A061E9P6_THECC; Heat shock transcription factor A8, putative
STRINGevm.model.supercontig_2.1690.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Representative plantOGRP1084768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-106heat shock transcription factor A8