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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2.142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 27412.4 Da PI: 5.8837 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H evm.model.supercontig_2.142 100 FSCNYCRRKFYSSQALGGHQNAH 122 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-6 | 98 | 128 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MITPNSNLES ENDSEISSQV ASNLSVPEAS PDPSKDSATT SSCLTNVIKL QSDPGSLSLD 60 LTLSFNASDQ AELKVTGEAT YEAAAAAAAP QSETRISRIF SCNYCRRKFY SSQALGGHQN 120 AHKRERTMAK RAMRMGIFSD RYTSLASLPL HGSAFRSLGI EAHSAMHQGI IPSQRPVETR 180 GVARFHQDGH FGMPIFMEDE DVDLFWPGSF RQVNEGIGLN SDSNLAQNSN NNVVAATPTS 240 PRTDTCPDLT LKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2.142 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910030.1 | 0.0 | zinc finger protein 4-like | ||||
Refseq | XP_021910031.1 | 0.0 | zinc finger protein 4-like | ||||
Refseq | XP_021910032.1 | 0.0 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 9e-44 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A1R3HQN9 | 1e-121 | A0A1R3HQN9_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_2.142 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-46 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2.142 |
Publications ? help Back to Top | |||
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