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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_2.121 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31731.4 Da PI: 10.1991 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_2.121 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 351.9 | 1.4e-107 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalae 69
mddd+ + rn+gyyep+ s+k nlglqlms +aer++k+ r+ l + + ++++++rd m++ +++++
evm.model.supercontig_2.121 1 MDDDALNIRNWGYYEPS-SFKGNLGLQLMSNMAERNTKPflpgRDPSL-MVGGNGTFHPRDcvvsetpmpMNY----AWINQ 76
99**9988********9.************************999999.************888888888888....88888 PP
GAGA_bind 70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkk 151
+++k++++++ +++ +++vl++t+s++s+q l++++ r+e+ + iee ++++ e +++k
evm.model.supercontig_2.121 77 -------HRDKFFNMIPGNTT-------NYNVLPETSSAQSMQI-----LQPPPSSSRDER--AVGRIEEPVPNK-EGAQSK 136
.......7789******6664.......799************9.....888888866666..666777776665.555666 PP
GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
krq++ pk++kakk++k +k+++++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSa
evm.model.supercontig_2.121 137 KRQSSGAPKTPKAKKPRK----PKDNNNPTV--QRVKPVKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSA 212
799999*******99999....333444444..69*********************************************** PP
GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
CCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
evm.model.supercontig_2.121 213 CCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 280
*******************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDDDALNIRN WGYYEPSSFK GNLGLQLMSN MAERNTKPFL PGRDPSLMVG GNGTFHPRDC 60
VVSETPMPMN YAWINQHRDK FFNMIPGNTT NYNVLPETSS AQSMQILQPP PSSSRDERAV 120
GRIEEPVPNK EGAQSKKRQS SGAPKTPKAK KPRKPKDNNN PTVQRVKPVK KSMDVVINGI 180
DMDISGIPIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS 240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAR HGTNKFVTIR VVHCC*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
