PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_192.10

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 168aa MW: 19155 Da PI: 10.1074

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_192.10	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.7	2e-10	26	62	14	50
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +R+ +i KAe +LCd+ v++i ++++g+l +++ evm.model.supercontig_192.10 26 VNRKRTIKVKAEQRGTLCDVPVCLIGYGPDGELITWP 62 59**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.92E-10	25	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-5	27	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MLQGSPPSRL YQTISPLHQQ QQCKKVNRKR TIKVKAEQRG TLCDVPVCLI GYGPDGELIT 60 WPENRPEVKE LVPKYKKSTS NSEKRNEYDL ESFLKTKKKT LGQDNGRIAG DRWPTSDKRL 120 DGLGNFDLVD LMVQLDSKLQ SLTQRRDHLI KSTAVPLNFM FAKPDRE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	97	KRNEYDLESFLKTKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_192.10

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887586.1	1e-113	agamous-like MADS-box protein AGL103
STRING	evm.model.supercontig_192.10	1e-121	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126
Representative plant	OGRP12139	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	6e-16	AGAMOUS-like 51

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_192.10