PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB

Protein Properties

Length: 251aa MW: 28922.5 Da PI: 7.0325

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_190.35	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.8e-18	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl evm.model.supercontig_190.35 8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ evm.model.supercontig_190.35 61 RGKMTLQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.947	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	2.26E-29	7	102	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-16	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-17	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	1.41E-11	10	55	No hit	No description
PROSITE profile	PS51294	26.506	56	110	IPR017930	Myb domain
SMART	SM00717	4.3E-16	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-15	61	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-23	63	109	IPR009057	Homeodomain-like
CDD	cd00167	2.70E-11	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVQEETRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTLQEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QQRKQDNSPS 120 SPSSNCCSSS STVTTVDLML FPDAGKASFY DTGGLDHVTT PEGKKIEVEE EKGYSMDDIW 180 KDIDLSEENT IKPVSNGYSN FSYPSIVASP SWEYSLDSVW RIFEEDTKMF LPTNQFPPCS 240 YEYGEAFLTG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-28	8	110	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_190.35

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887605.1	0.0	transcription factor MYB59 isoform X1
Swissprot	Q9LX82	2e-99	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A061GXJ9	1e-119	A0A061GXJ9_THECC; Myb domain protein 59 isoform 2
STRING	evm.model.supercontig_190.35	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2502	27	74
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	4e-97	myb domain protein 48

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_190.35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]