PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.98
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 163aa    MW: 17640.1 Da    PI: 5.6552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.98genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000688431354
                                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                          HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                 R+ +N+++++Lr++  + a       ++K +i   A +YIk+L
  evm.model.supercontig_19.98  8 RAVLNEKLQTLRSITNShA-------VNKTSIIVDASKYIKEL 43
                                 56799********998855.......9**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-6759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.75E-483152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVSREHKRAV LNEKLQTLRS ITNSHAVNKT SIIVDASKYI KELKQKVERL NQDIAATCTQ  60
TSTDQNPLPG IHVTVETLEK GFLINVCCGR SCPGLLVSIL EAFEDLGLNV LEARVSCTES  120
FRLQAVGGED GEDEASESID AQVVKQVVLQ AIKNWGGPAH QG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.98
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904163.11e-116transcription factor SCREAM2
TrEMBLA0A1R3HFM62e-83A0A1R3HFM6_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_19.981e-116(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159433
Representative plantOGRP190735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-12bHLH family protein