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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_19.62 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bZIP | ||||||||
Protein Properties | Length: 378aa MW: 41556.9 Da PI: 6.0211 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 171 | 223 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + evm.model.supercontig_19.62 171 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 223 9****************************************999877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-17 | 167 | 231 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.622 | 169 | 232 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.8E-9 | 171 | 220 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.03E-11 | 171 | 222 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.2E-11 | 171 | 225 | No hit | No description |
CDD | cd14703 | 1.21E-23 | 172 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDMEDPNPKG NQNPNPNPAL QYQSTAHHHP QSSATSFANP AVPFRGSYHR RAQSEVQFRI 60 PDDLDLASDP FGSFEELGSE DDLFCTYMDI EKFGSRPDDG AGSSAPKSEN VEGLDNGGGD 120 GGGREKNVDE NVRSRHRHSN SLDGSSILES IEAKKAMAPD KLAELWNVDP KRAKRIIANR 180 QSAARSKERK ARYISELERK VQTLQTEATT LSAQLTLFQR DTTGLTTENT ELKLRLQAME 240 QQAQLRDALN EALKKEVERL KVATGEMMTP ADTYNLGMHQ IPYSQSSFFA SPPQPGQADA 300 QNMQMPQFHP FQSHLSAPNI ANPHHPLLSN AHAHTFSEML QQDPLGRLQG LDISSRGSHL 360 VKAEGPSISA SESSSTF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_19.62 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904257.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | O22873 | 1e-131 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A1R3KGD4 | 1e-173 | A0A1R3KGD4_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_19.62 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-125 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_19.62 |
Publications ? help Back to Top | |||
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