PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_19.277

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 276aa MW: 30136.6 Da PI: 7.371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_19.277	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H evm.model.supercontig_19.277 54 YSCSFCRREFRSAQALGGHMNVH 76 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-6	51	80	No hit	No description
PROSITE profile	PS50157	11.219	54	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEQSQYNWFF MRSRHILKST HFQALADSWE EKAFAEDAAA ARSTGGCIWP PRSYSCSFCR 60 REFRSAQALG GHMNVHRRDR AKLKQSLTAN NMNNPLNNDS LEPPQTTLSP SRVSATDHNH 120 HHHPLGFQLI CPVVGNDSPS GSDSGAKGST QNISDSSMEN TPSDHNQTDS IHIMGYSTRV 180 ETDLSMGLNS VFGQNPATGS CYGDDDGADH MTMMIGCKRH KSMSTSTRSV SPLLKISDEK 240 LCSLLKMDVY GGGKGNAMNE LDLELRLGGA VPKVK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	6e-13	49	76	2	29	superman protein
2l1o_A	6e-13	49	76	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRDRAKLKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_19.277

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904073.1	0.0	zinc finger protein 10-like
TrEMBL	A0A061FLY1	2e-51	A0A061FLY1_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	evm.model.supercontig_19.277	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5128	25	44
Representative plant	OGRP576	15	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_19.277