PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1892.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 476aa    MW: 53133.9 Da    PI: 6.0806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1892.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14303348454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  evm.model.supercontig_1892.1 303 NHVEAERQRRERLNNRFYALRSVVPNV-----SKMDKASLLSDAVTYIKEL 348
                                   799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4328209IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.79E-18299362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.796299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-15302352No hitNo description
Gene3DG3DSA:4.10.280.103.7E-17303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEDLVSSASL SSLMSVCQES SPTNTTTLQQ RLQFIVQSRP EWWVYSIFWQ ACKDANGQLS  60
LSWGDGFFRG TKASKKLSKQ NRFGFNLERK KLSREIHALF TEEMEMDRLE EDGDVTDYEW  120
YYTVSSVGRT FGVEDGGILG RSFSCGTFLW LTGDHELQLY DQCERVREAR AHRIQTLVCV  180
ATPCGVVEFG SSDMIKEDWG MVQLAKSLFA NSDIPSFLSC RQNEAEQQLI DHLPASRIIS  240
PFLGTAILPA TTTTTGEIKK EVTIGLGRSS SDSGPSDSDG HFNVQVKKRG RKPVNGCSDS  300
PLNHVEAERQ RRERLNNRFY ALRSVVPNVS KMDKASLLSD AVTYIKELKA KIGELEAKLQ  360
AQSQNRGAAR LCYDNQSTTS STGDYARAAG QSYGTSTEVD VKIVGSEALI RVQSPDMNYP  420
AARMMDVLRE LDFQIHHVSV SCVQELVLQD IVIRVPDGSI SEDIMRTAIY QRLLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-26242095192Transcription factor MYC3
4rqw_B7e-26242095192Transcription factor MYC3
4rs9_A7e-26242095192Transcription factor MYC3
4yz6_A7e-26242095192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890140.10.0transcription factor MYC2-like
TrEMBLB9RYU51e-176B9RYU5_RICCO; DNA binding protein, putative
STRINGevm.model.supercontig_1892.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-48bHLH family protein