PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 53133.9 Da PI: 6.0806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 7.9e-14 | 303 | 348 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L evm.model.supercontig_1892.1 303 NHVEAERQRRERLNNRFYALRSVVPNV-----SKMDKASLLSDAVTYIKEL 348 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-43 | 28 | 209 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.79E-18 | 299 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.796 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.85E-15 | 302 | 352 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 303 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-11 | 303 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEDLVSSASL SSLMSVCQES SPTNTTTLQQ RLQFIVQSRP EWWVYSIFWQ ACKDANGQLS 60 LSWGDGFFRG TKASKKLSKQ NRFGFNLERK KLSREIHALF TEEMEMDRLE EDGDVTDYEW 120 YYTVSSVGRT FGVEDGGILG RSFSCGTFLW LTGDHELQLY DQCERVREAR AHRIQTLVCV 180 ATPCGVVEFG SSDMIKEDWG MVQLAKSLFA NSDIPSFLSC RQNEAEQQLI DHLPASRIIS 240 PFLGTAILPA TTTTTGEIKK EVTIGLGRSS SDSGPSDSDG HFNVQVKKRG RKPVNGCSDS 300 PLNHVEAERQ RRERLNNRFY ALRSVVPNVS KMDKASLLSD AVTYIKELKA KIGELEAKLQ 360 AQSQNRGAAR LCYDNQSTTS STGDYARAAG QSYGTSTEVD VKIVGSEALI RVQSPDMNYP 420 AARMMDVLRE LDFQIHHVSV SCVQELVLQD IVIRVPDGSI SEDIMRTAIY QRLLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-26 | 24 | 209 | 5 | 192 | Transcription factor MYC3 |
4rqw_B | 7e-26 | 24 | 209 | 5 | 192 | Transcription factor MYC3 |
4rs9_A | 7e-26 | 24 | 209 | 5 | 192 | Transcription factor MYC3 |
4yz6_A | 7e-26 | 24 | 209 | 5 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 308 | 313 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1892.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890140.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | B9RYU5 | 1e-176 | B9RYU5_RICCO; DNA binding protein, putative | ||||
STRING | evm.model.supercontig_1892.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 | Representative plant | OGRP8004 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1892.1 |