PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_185.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 117aa MW: 13420.9 Da PI: 10.5448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.7 | 8.1e-15 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s ++ tf kR++ ++KK ELS+LCd++++ ii+s evm.model.supercontig_185.7 11 ITNNSAKKATFKKRKKELMKKVCELSTLCDVKACAIIYS 49 899***********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.741 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.4E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-20 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-15 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MTRKKVKLTY ITNNSAKKAT FKKRKKELMK KVCELSTLCD VKACAIIYSL YDSQPNLWFS 60 SLGAQHMLVD FKRMPEMEQS KKMVNQKSFL HQKIIKPQEA TDGGVMKRPG ETFTQI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLTYITNNSAKKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_185.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887773.1 | 2e-64 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 8e-31 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S3ZJU3 | 3e-42 | A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80 | ||||
STRING | evm.model.supercontig_185.7 | 6e-82 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-29 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_185.7 |
Publications ? help Back to Top | |||
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