PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_181.13
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 394aa    MW: 45306.7 Da    PI: 4.3533
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_181.13genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.2e-16161244286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   Wt++e+l+L++a  e+  + ++++l+   W+ev++k++e   +er+ +qC+++++ l+k+ykk+k +  +  +++ss+++y
  evm.model.supercontig_181.13 161 WTERETLVLLDAWGERFLQRGKKSLRSEEWQEVAEKVSEvSEIERTDTQCRNRLDTLKKKYKKEKMNLAE--KGNSSKWVY 239
                                   *************************************772578************************999..58899**** PP

                      trihelix  82 fdqle 86 
                                   f++++
  evm.model.supercontig_181.13 240 FKKMD 244
                                   ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-22160246No hitNo description
PROSITE profilePS500906.609161218IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5161230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYGLKQQ QGYGSSNRQK LPVRNAPYSR PIDGQYVDDD ENDDDELEDE  60
DLVEEEENNN QNSGLQYVGK DMDDEDDEDD EYEEDMDELP RERQSYARRI EDDNIESHPK  120
KRKLKSLVSS YEFAPRVQVS PVAALAVPKP SFGGRNSLTD WTERETLVLL DAWGERFLQR  180
GKKSLRSEEW QEVAEKVSEV SEIERTDTQC RNRLDTLKKK YKKEKMNLAE KGNSSKWVYF  240
KKMDMLMSSP PQQGGLSCGL DSGEYVFMNP RVYLNRANGL DEMRDSPGNS ESTDGEDDES  300
DGLPLKKRKY GRESDGSSFS LLADSIQKFS EIYEKIENSK RQQMLELEKM RMDFHRELEM  360
QKRQIMERAQ AEIAKIRQGD DEGNEISAGN AGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_181.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887906.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A067KQH90.0A0A067KQH9_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_181.130.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-69Trihelix family protein