PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_181.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SBP
Protein Properties Length: 546aa    MW: 60492.9 Da    PI: 9.3231
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_181.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.21.1e-23153205153
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels 53 
                                   +Cqve+C +dls+ k+yhrrhkvCe+hska+ +lv gl+qrfCqqCsr  +l 
  evm.model.supercontig_181.10 153 VCQVEDCGTDLSNSKDYHRRHKVCEMHSKASRALVGGLMQRFCQQCSRKEKLP 205
                                   6***********************************************88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-24147204IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.931151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-23152221IPR004333Transcription factor, SBP-box
PfamPF031104.3E-18154205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEARLGTQAH HFYDMSSADM RGVGKRRHEW DLNEWKWDGD LFIARQLNPG SPDVMGQQFF  60
PLGSGISLPG NLSNSSSSCS DEVNVGFEKG KTELEKRRRV VTEEEDALNE EVGNLTLKLG  120
GHGYPIRERG VGNWEGTSGK KTKLGGAASN RAVCQVEDCG TDLSNSKDYH RRHKVCEMHS  180
KASRALVGGL MQRFCQQCSR KEKLPQTVGW AYKRRRKTNP DAGANGNPLK DDQTSSYLLI  240
SLLRILSNMH SNRSGQITDQ DLLTHLLRSL AGNAGENGGR NISGLLQEPQ DMLNDVTSVG  300
NSEVVSALLS NGQAPSRAFK HIMVPVSEIP RQGLHSHEAR GAELRSSAGL VKINNFDLND  360
IYIDSDDGTE EIGRSSVPTN LGTTSVDTPW MQQDSHQSSP PQTSGNSDSA SAQSPSSSSG  420
DTQECSGYRF PFRQIWKVEV PRKLAFFAWE ARRGYILTID KLMREMTMVN HATCVKGQWN  480
LVIMSFYGFR LRTSYAQKAT LGVALAFQSA WLKNLHCLPH QLSNAHKKIS LKRFQMRSTS  540
RLAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A8e-23154200652squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_181.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887905.10.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12
SwissprotQ9S7P55e-91SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2R4K3381e-167A0A2R4K338_LITCN; Squamosa promoter binding-like protein
STRINGevm.model.supercontig_181.100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.14e-83squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]