PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_180.6

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WRKY

Protein Properties

Length: 116aa MW: 13300.9 Da PI: 8.4918

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_180.6	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.5	1.7e-10	94	115	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+s pr evm.model.supercontig_180.6 94 LDDGYRWRKYGQKFVKNSVQPR 115 59*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-11	80	115	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-9	87	115	IPR003657	WRKY domain
PROSITE profile	PS50811	12.897	89	115	IPR003657	WRKY domain
Pfam	PF03106	1.4E-6	95	115	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MDLDITLPII TQLDDISCLI SFHTQDRTVH HEQDLDWVNI SAPDQYDDQP PPRLVNNGGD 60 IRNVRGKNKG KNSITRKTTT PRIAFHTRSA DDILDDGYRW RKYGQKFVKN SVQPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_180.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887938.1	9e-81	probable WRKY transcription factor 56
TrEMBL	A0A2I4FC67	1e-18	A0A2I4FC67_JUGRE; probable WRKY transcription factor 43
TrEMBL	A0A2N9IQX5	6e-19	A0A2N9IQX5_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_180.6	4e-80	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-16	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_180.6