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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_18.53 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 119aa MW: 13694.9 Da PI: 8.7061 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 53.4 | 4.9e-17 | 10 | 100 | 285 | 374 |
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgWkdr 365 v + ++++ i+++va+eg+er++r + Wr+ + + + ++ lse+ q++l++++++ gy ++e++ +s++ gWk+ evm.model.supercontig_18.53 10 VTELIFKNGIEQIVAMEGSERVARSVKIDVWRAFFARYRMMEMGLSESSLYQVELIIKQFACAGYcTLEKNGKSMIVGWKGT 91 5677899******************************************************999736677777888****** PP GRAS 366 pLvsvSaWr 374 p+ s+SaW+ evm.model.supercontig_18.53 92 PIHSLSAWK 100 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.6E-14 | 10 | 100 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MADELELRGV TELIFKNGIE QIVAMEGSER VARSVKIDVW RAFFARYRMM EMGLSESSLY 60 QVELIIKQFA CAGYCTLEKN GKSMIVGWKG TPIHSLSAWK FSRDRFREAF LNYRNELV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_18.53 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904476.1 | 8e-69 | LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EZA1 | ||||
TrEMBL | A0A1R3IHQ1 | 8e-47 | A0A1R3IHQ1_9ROSI; Transcription factor GRAS | ||||
STRING | evm.model.supercontig_18.53 | 2e-82 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-10 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_18.53 |