PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_18.252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | BES1 | ||||||||
Protein Properties | Length: 761aa MW: 85438.9 Da PI: 6.2153 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 148.7 | 4.8e-46 | 77 | 219 | 1 | 136 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.. 76 gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ ++skp evm.model.supercontig_18.252 77 GGNRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQSSKPVgg 157 578999***************************************************************987788888884 PP DUF822 77 .eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasaasl 136 ++ + ss+ as++++ ++ +ss +s +e s+++k + +p ps +d ++a ++++ evm.model.supercontig_18.252 158 tSAGMTSSSSHMASQQTPPPvLRGVSSGYRSSMEYNSCRMKGVFVPTPSPYDLSPVARSQTS 219 333344444555899999998999****************************9999865443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.5E-39 | 79 | 214 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 2.81E-180 | 259 | 703 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 5.2E-199 | 262 | 700 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 2.3E-101 | 268 | 688 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 299 | 313 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 320 | 338 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 342 | 363 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 346 | 354 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 7.7E-7 | 425 | 434 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 6.3E-69 | 435 | 457 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 508 | 527 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 542 | 558 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 559 | 570 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-69 | 577 | 600 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.7E-7 | 580 | 590 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 6.3E-69 | 617 | 639 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.7E-7 | 668 | 682 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 7.7E-7 | 683 | 697 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MATDMQKLIG TGEEDDDEDV EMDVKEEDDE DEENREKHIA TQVMVGVDGG MPPSGSSNQF 60 QHHQQIQEQV STPGGGGGNR RCRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR 120 ADINDVIAAL AREAGWVVLP DGTTFPSRSQ SSKPVGGTSA GMTSSSSHMA SQQTPPPVLR 180 GVSSGYRSSM EYNSCRMKGV FVPTPSPYDL SPVARSQTSV MVGDGGVQPE SHPLSGNSVD 240 TLNDKQVVDI PSKLSERNFA GTPYVPVYVM LPLGVINMKC ELVDPDGLLK QLRTLKSVNV 300 DGVMVDCWWG IVEAHAPLEY NWSGYRRLFQ MIRELKLKLQ VVMSFHECGG NVGDDVCIPL 360 PHWVAEIGRH NPDIFFTDKE GRRNPECLSW GIDKERVLRG RTALEVYFDY MRSFRIEFDD 420 LFEDGIISMI EVGLGPCGEL RFPSCPVKHG WRYPGIGEFQ CYDQYLLKSL RKAAEARGHS 480 FWARGPENAG SYNSQPHETG FFCDGGDYDG YYGRFFLNWY SQLLVSHGDR VLSLAKLAFE 540 GTCIAAKLSG IYWWYKTASH AAELTAGFYN PCNRDGYAAI MAMLKKHGAA LNFACAELHI 600 LNQHEDLAGA LADPDGLTWQ VLNAAWDVNV PITTENALPC YGRIEYNKIL DNAKPLNDPD 660 GRHLSSLIYL RLSTTLMDRQ NFMEFEHFVK KMHEKKMEES RRIFITEDSL AEGWWRMMVA 720 LFEMLGRKFE VLGQPKMLKS STHKEEHCVS VVHNTIPSML * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wds_A | 1e-151 | 264 | 693 | 11 | 442 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_18.252 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904320.1 | 0.0 | beta-amylase 7 isoform X1 | ||||
Refseq | XP_021904321.1 | 0.0 | beta-amylase 7 isoform X1 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A061DV68 | 0.0 | A0A061DV68_THECC; Beta-amylase | ||||
STRING | evm.model.supercontig_18.252 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Representative plant | OGRP4345 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_18.252 |
Publications ? help Back to Top | |||
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