PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.208
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 490aa    MW: 54796.5 Da    PI: 8.4928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.208genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-195197148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g WT+ Ede l+ av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  evm.model.supercontig_18.208 51 KGGWTQKEDENLISAVQKYKGKNWKKIAECVP-DRTDVQCLHRWQKVL 97
                                  688*****************************.************986 PP
2Myb_DNA-binding53.94.2e-17103149148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W+ eEd l+++ v + G++ W+ Ia++++ gR +kqc++rw+++l
  evm.model.supercontig_18.208 103 KGPWSIEEDNLIIKIVGEQGNKKWSEIAKHLP-GRIGKQCRERWYNHL 149
                                   79******************************.*************97 PP
3Myb_DNA-binding57.43.4e-18155197145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   r +WT+eE+ +l+ a++++G++ W+ Ia+ ++ gRt++++k++w+
  evm.model.supercontig_18.208 155 RSAWTKEEEIILITAHREHGNK-WAEIAKLLP-GRTENSIKNHWN 197
                                   789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5324697IPR017930Myb domain
SMARTSM007173.3E-165099IPR001005SANT/Myb domain
PfamPF002491.0E-165197IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-2052124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2253110IPR009057Homeodomain-like
CDDcd001677.26E-145497No hitNo description
PROSITE profilePS5129428.68298153IPR017930Myb domain
SuperFamilySSF466895.24E-30100196IPR009057Homeodomain-like
SMARTSM007177.7E-15102151IPR001005SANT/Myb domain
CDDcd001675.04E-13105149No hitNo description
PfamPF139211.2E-16106164No hitNo description
Gene3DG3DSA:1.10.10.606.0E-25111156IPR009057Homeodomain-like
PROSITE profilePS5129421.894154204IPR017930Myb domain
SMARTSM007173.3E-17154202IPR001005SANT/Myb domain
CDDcd001673.48E-13157197No hitNo description
Gene3DG3DSA:1.10.10.601.8E-22157203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGEDKEPNFV REKEGLDAAS PSVSNGSCDH LPLKPASVHG RITGPTRRST KGGWTQKEDE  60
NLISAVQKYK GKNWKKIAEC VPDRTDVQCL HRWQKVLNPD LVKGPWSIEE DNLIIKIVGE  120
QGNKKWSEIA KHLPGRIGKQ CRERWYNHLN PEIKRSAWTK EEEIILITAH REHGNKWAEI  180
AKLLPGRTEN SIKNHWNCSV RKKAELFSSS NPELRICGLN NENRKSDTIK INTSRQDLNH  240
NRRMDSLSLD LPLGNEIKDA DKVQKITGSG NEDALATSLN GGNCREGCTY EESKHIGSSN  300
QTSPFHDTSC VSFPHLLTRT DEAGKHINFS PSRKMMEPLS ALSTPLSSHG CNGKTRSSLS  360
DHGTEEVAFP VTSEVLATPP SQNEGELPTS CMTPESILRI VASTYKNTPS IIRRRGSSAR  420
KRSRNGCSCS LEERIDKLEN SHEIQHPRFC DNINDVQQDL VSSLKSQKLE SCATNSMEKS  480
PSLETVKRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-65512046159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-65512046159MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904374.10.0transcription factor MYB3R-2-like isoform X2
TrEMBLA0A1Q3CZD01e-111A0A1Q3CZD0_CEPFO; Myb_DNA-bind_6 domain-containing protein (Fragment)
STRINGevm.model.supercontig_18.2080.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-82Homeodomain-like protein