PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.194
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 292aa    MW: 32129.8 Da    PI: 9.5109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.194genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-204090256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++ GVr+++ +grWvAeI+d +   +r r +lg+++t+eeAa+a+++a+++l+ge
  evm.model.supercontig_18.194 40 RFVGVRQRP-SGRWVAEIKDST---QRVRLWLGTYDTPEEAARAYDEAARALRGE 90
                                  589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3540103IPR001471AP2/ERF domain
CDDcd000189.21E-314099No hitNo description
Gene3DG3DSA:3.30.730.102.5E-284097IPR001471AP2/ERF domain
PROSITE profilePS5103220.564097IPR001471AP2/ERF domain
PfamPF008474.3E-154090IPR001471AP2/ERF domain
PRINTSPR003672.8E-74152IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-204197IPR016177DNA-binding domain
PRINTSPR003672.8E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MARLDQTKEA TAANTTTTTT TTSSDKRAKK PIMTGAAARR FVGVRQRPSG RWVAEIKDST  60
QRVRLWLGTY DTPEEAARAY DEAARALRGE NARTNFAPVN QSTSSTSNGS LVMSSGSDCR  120
HGLSFSSLRA RLSKNLQNIM ARSTESKTTK SRVSDHFTFA SIFHFRGYQN QSPRPVDVKG  180
MEKVVQPSII VPHAGGEPQE LCSWDSSDSS NECIGLRQHG FDSEGSDIGE LNTLVGDHHH  240
HHNHFHHHEC MMGWMVGAEI MSEKYVEGSR SKRFKVSSSV VVPPTFSASP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-143496871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904501.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A061DTN11e-107A0A061DTN1_THECC; AP2/ERF domain-containing transcription factor
TrEMBLA5BB591e-107A5BB59_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_18.1940.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-17related to AP2 11