PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1780.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 325aa    MW: 36588.6 Da    PI: 6.0767
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1780.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.6e-35121042103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F++k++++++d++++ li+ws+ +nsf+v d+ +f+ ++Lp yFkh+nf+SFvRQLn+YgFkkv++++         weF+
  evm.model.supercontig_1780.1  12 FVMKTFQMVNDPTTDMLITWSRGNNSFIVADPLDFSLRILPAYFKHNNFSSFVRQLNTYGFKKVDSDR---------WEFA 83 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   +++F +g+k+ll++i rkk++
  evm.model.supercontig_1780.1  84 NEYFLRGQKHLLKNIMRKKHA 104
                                   ******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-538101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3610101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVMEANDVIA PFVMKTFQMV NDPTTDMLIT WSRGNNSFIV ADPLDFSLRI LPAYFKHNNF  60
SSFVRQLNTY GFKKVDSDRW EFANEYFLRG QKHLLKNIMR KKHAKSPFAM QMIMKSGEYN  120
LLEDEEIVME ITRLKQEQKS LEEELEGMNK RLEATERRPK QMMAFLNKVV EDPDLLPRML  180
LQKERTKHLT AMENKKRRLI ISSSEPSSTC YMQQQEDELA TEVTRRGVSS SSSPESLCQS  240
SPSSDNSSME WVEVAHRNDN LPAILSAVGL GNGRTASLGT PSWVLPVGSN GGYFGEVSYL  300
GIGGAGETSS SPPPYPFSLL EGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24910126129Heat shock factor protein 1
5d5v_B1e-24910126129Heat shock factor protein 1
5d5v_D1e-24910126129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890728.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A067KBY41e-116A0A067KBY4_JATCU; Uncharacterized protein
TrEMBLA0A2C9UB431e-116A0A2C9UB43_MANES; Uncharacterized protein
STRINGevm.model.supercontig_1780.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-86heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]