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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_178.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 699aa MW: 78594.5 Da PI: 6.8737 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ ++++++q++ Le +Fe++++p++++r++L+++lgL+ +qVk+WFqN+R++ + evm.model.supercontig_178.19 27 KRTHHRHNSSQIQHLELFFENCPHPDESQRRQLSRELGLDPKQVKFWFQNKRTQTR 82 6788899*********************************************9987 PP | |||||||
2 | START | 124.4 | 1.4e-39 | 245 | 464 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWd 73 a +a++elv++ +++ep+W +s +d++ ++f++ ++ +++e +++sg+ +m+ l e ++d +W+ evm.model.supercontig_178.19 245 AASAMDELVRLLSVNEPLWIRSEssgsrAVIHRDTYEKIFPKVNGfknmnSRIESSKESGMIIMNGSHLIEMIMDPV-KWT 324 6789******************98877655678888899988888999*****************************.*** PP TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 ++ kae l ++ g + l lm+ ++ lsplvp R+f ++R +rql+ag wv vdvS d +++ evm.model.supercontig_178.19 325 DLFPtivcKAEKLYEVQAGasgnknSCLLLMYEQMHILSPLVPaREFIILRNCRQLEAGLWVMVDVSYDLKDHTRP----- 400 ********77777777777788999************************************************986..... PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 R+ +lpSg++i++++ng skv+w+ehv++++++ h+l+r l+ sg a ga +w +lqr ce+ evm.model.supercontig_178.19 401 RCWKLPSGCMIQDMANGCSKVIWIEHVEVDDKILtHQLYRDLLCSGSAYGAERWIVALQRICER 464 ********************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 11 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.01E-17 | 14 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 26 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-16 | 27 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-16 | 27 | 85 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 40.236 | 234 | 467 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.79E-27 | 236 | 465 | No hit | No description |
CDD | cd08875 | 3.61E-97 | 238 | 463 | No hit | No description |
SMART | SM00234 | 2.4E-27 | 243 | 464 | IPR002913 | START domain |
Pfam | PF01852 | 9.2E-33 | 245 | 464 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.86E-5 | 534 | 690 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MDIAMGNSGT NNSSEEQRTS NRSDSEKRTH HRHNSSQIQH LELFFENCPH PDESQRRQLS 60 RELGLDPKQV KFWFQNKRTQ TRAQSERADN SALREENERI QCENLAIREA LKNAICPACG 120 GPPFGLEERQ RSLQKLRMEN AQLKEEHEKV SNFLAKYTGK PVSQFEEMSS PTRGKGPSNA 180 FDSLPPSYST QIGFPSVDNL DNFIQKYQEN IGNNLSVNNR VIDHRQYFDP WLISDVEKAF 240 MVETAASAMD ELVRLLSVNE PLWIRSESSG SRAVIHRDTY EKIFPKVNGF KNMNSRIESS 300 KESGMIIMNG SHLIEMIMDP VKWTDLFPTI VCKAEKLYEV QAGASGNKNS CLLLMYEQMH 360 ILSPLVPARE FIILRNCRQL EAGLWVMVDV SYDLKDHTRP RCWKLPSGCM IQDMANGCSK 420 VIWIEHVEVD DKILTHQLYR DLLCSGSAYG AERWIVALQR ICERLTFSKT ENSCDSNHSS 480 VMSNGMKSML KLCHRMIKDF CARLCMSCDN KLDFPHMHDV NSSGVRVCVH EGIGPSQPNG 540 TIVSATSSLW LPLPPLRVFN FFKDENMRNK PFNPTENGMV MLQESFIDSL GGMVVYAPID 600 VPAMNVAITG DDINKSIPIL PSGFVISTDG RQNNTGGAST SADTSLGMRR GGGSLITVVF 660 QVVVSTKDLN MESVATVKNL ISSTIQRIKD VLNCSNIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_178.19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888059.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A2H5PLL6 | 0.0 | A0A2H5PLL6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S673 | 0.0 | V4S673_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_178.19 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24053 | 2 | 3 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_178.19 |